encrypting script

Hi,

I looking forward to use this software in my company. It’s great, but I have a small problem with the interface. I get a lot a files every day and as a Windows user I have to add them to the application , I a have a problem with that because I can add a folder and I have to add everything step by step etc. Does somebody knows something about a Windows script that I can use to encrypt those files automatically? Any Ideas?

Do I understand it correctly that you
have the problem of many files you want to
decrypt?
Would a automatic recursive method help that
decrypt any file in a given directory and its subdirectories?